| Courses | Videolectures | |
| Online Books | Posters | Theses |
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| Tutorials | ||
| Courses |
| Analyzing and modeling metabolic pathways (by K.P. Schäfer, University Konstanz) |
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| Assessing reliability of protein-protein interaction experiments (by L. Wong, Institute for Infocomm Research) |
[PPT] |
| Bacterial two-hybrid (by R. Koebnik, University Halle) |
[PDF] |
| Biopathways and protein interaction databases (by F. Olken, Lawrence Berkeley National Laboratory) |
[PDF] |
| Computational approaches to studies of protein-protein interactions (by J.E. Wampler, University of Georgia Athens) |
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| Functional genomics II - protein interactions (by K.P. Schäfer, University Konstanz) |
[HTML] |
| Identification of protein-protein interactions by the yeast 2-hybrid system (by Alliance for Cell Signaling, Myrias genetics Inc.) |
[PPT] |
| Inferring molecular interaction networks (by T.S. Jaakkola, MIT AI Lab) |
[PDF] |
| Mining literature for protein-protein interactions (by J.-H. Kim, BRIC, Korea) |
[HTML] |
| More yeast two-hybrid (by R. Koebnik, University Halle) |
[PDF] |
| Postgenomic analysis protein-protein interactions functional predictions (by I. Xenarios, L. Salwinski, J. Duan, C. Deane) |
[PDF] |
| Protein docking (by A.P. Singh, Stanford University) |
[PDF] |
| Protein interaction networks and their use in drug discovery (by M. Pellegrini, Protein Pathways Inc.) |
[PDF] |
| Protein-ligand docking (by M. Rarey, GMD) |
[PDF] |
| Protein-protein docking (by P.K. Agarwal, Department of Computer Science, Duke University) |
[PDF] |
| Protein-protein docking - basics and new applications (by O. Kohlbacher and H.-P. Lenhof, Center for Bioinformatics, Saarbrücken and Celera Genomics, Rockville USA) |
[PDF] |
| Protein-protein interaction (by T. Kabir, I. Nooren, H. Ponstingl, EBI) |
[HTML] |
| Protein-protein interaction prediction (by A. Porollo, Cincinatti Children's Hospital Medical Center) |
[PPT] |
| Residue conservation at protein-protein interfaces (by W. Valdar, University College London) |
[HTML] |
| Structure-based modelling of protein-protein interactions (by D. Ritchie, King's College, University of Aberdeen) |
[PDF] |
| The yeast two-hybrid system (by A.C. Luebke, University of Wisconsin-Eau Claire) |
[PPT] |
| Understanding protein interactions (by X.J. Duan, UCLA-DOE Laboratory of Structural Biology and Molecular Medicine) |
[PDF] |
| Use of a large scale yeast two-hybrid technology in proteomics studies (by P. Legrain, CEA-Saclay) |
[HTML] |
| Yeast 2-H - A tale of two hybrids (by P. Dhar, BioInformatics Institute Singapore) |
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| Videolectures (videolectures.net) |
| Evolution of protein complexes and protein interaction networks (by Sarah Teichmann, Structural Studies Division, MRC Laboratory of Molecular Biology ) |
| From Protein-Protein to Domain-Domain Interactions and Back (by Michael Schroeder, Biotechnology Center - BIOTEC, Dresden University of Technology) |
| Identifying interactions in the time and frequency domains in local and global networks (by Cunlu Zou, Department of Computer Science, University of Warwick) |
| Online Books |
| Molecular surfaces: a review | |
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| Proteins / Biophysics Textbook | |
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[PDF] |
| Posters |
| A scintillation proximity assay (SPA) to quantitate Src Homology 2 (SH2) and Src Homology 3 (SH3) domain binding to specific peptide sequences (by D.R. Mobbs, J.N.R. Blair, J.A. Smith, S.J. Decker, D. Baltimore, G.B. Cohen, M. Picardo, N.D. Cook, Amersham International plc.) |
[PDF] |
| Automatic extraction of information on protein-protein interaction from scientic literature (by T. Ono, H. Hishigaki, A. Tanigami, T. Takagi, Otsuka GEN Research Institute) |
[PDF] |
| Building a new rotamer library for protein-protein docking using energy calculations and statistical approaches (by K. Koch, F. Zöllner, G. Sagerer, University Bielefeld) |
[PDF] |
| Human immunodeficiency virus protein-protein interactions: developing high throughput screens for novel drug targets (by R. Ptak, P. Ward, S. Halliday, S. Bartram, T. Fletcher, R. Buckheit, Serquest Inc.) |
[PDF] |
| Human immunodeficiency virus protein-protein interactions: developing high throughput screens for novel drug targets (by P. Ward, R. Ptak, S. Halliday, S. Bartram, R. Buckheit, T. Fletcher, Serquest Inc.) |
[PDF] |
| Identification of visual cycle protein-protein interactions (by S.K. Bhattacharya, Z. Wu, K.A. West, Z. Jin, M. Nawrot, J.C. Saari, J.W. Crabb, Cole Eye Institute and Lerner Research Institute & University of Washington) |
[PDF] |
| Interaction-based analysis of protein function and network (by H. Hishigaki, T. Ono, A. Tanigami, T. Takagi, University Tokyo) |
[PDF] |
| Predictome: a database of putative functional links between Predictome (by J.C. Mellor, J. Mintseris, K.H. Clodfelter, C. DeLisi, University Boston) |
[PDF] |
| Probing protein-protein interactions in mammalian cells using tandem affinity purification (TAP) (by D.M. Cox, M. Du, J. Chan, X. Guo, J.C. McDermott, K.W.M. Siu, York University) |
[PDF] |
| Protein-protein docking with a reduced protein model accounting for side chain flexibility (by M. Zacharias, IMB) |
[PDF] |
| Protein-protein docking predictions with RosettaDock (by J.J. Gray, M. Daily, L. Guo, Johns Hopkins University and D. Baker, S. Moughon, C. Wan, O. Scheuler-Furman, University of Washington & Howard Hughes Medical Institute) |
[PDF] |
| Protein-protein interactions: development of FRET assay measuring CD40L and 5C8 interactions (by M. Jarpe, G. Glover, S. Josiah, Biogen Inc.) |
[PDF] |
| Proteomics identification of protein-protein interactions in MAP kinase pathways that are involved in plant defense reactions (by T. Xing, C. Rampitsch, W. Mauthe, B. Miki, Agriculture and Agri-Food Canada) |
[PDF] |
| Theses |
| Analyse von Protein-Protein Interaktionen im Typ IV Sekretionssystem von Agrobacterium tumefaciens (by L. Krall, LMU München) |
[PDF] |
| Analyse von Protein-Protein-Wechselwirkungen mittels Phage-Display (by R. Bräuning, University Heidelberg) |
[PDF] |
| Computational analysis of protein function within complete genomes [Chapter 4: Genomic analysis of protein interaction] (by A.J. Enright, University Cambridge) |
[PDF] |
| Fluoreszenz-optimierte Detektion heterologer Protein-Protein Interaktionen in Saccharomyces cerevisiae als Alternative zur Yeast Two Hybrid Methode (by M. Braun, University Tübingen) |
[PDF] |
| Identifizierung und Charakterisierung von Interaktionspartnern des viralen Antiapoptoseproteins P35 und des Caspasenadaptormoleküls Apaf-1 (by D.S. Takramah, Technical University Berlin) |
[PDF] |
| Matrix-bound peptides modeling protein-protein interactions (by C. Yu, University Halle-Wittenberg) |
[PDF] |
| Protein-Protein-Interaktionen zwischen Homöodomänenproteinen der Gerste: Identifizierung und Charakterisierung interagierender Partner von BKN3, dem Genprodukt des Hooded-Lokus (by J. Müller, University Köln) |
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| Soft volume models for protein-protein docking (by S. Neumann, University Bielefeld) |
[HTML] |
| Struktur-Funktions-Analyse von Hop: Tpr-vermittelte Protein-Protein-Wechselwirkungen (by C. Scheufler, Techn. University München) |
[PDF] |
| Untersuchungen zu Protein-Interaktionspartnern des HCN2 Schrittmacherkanals (by H. Abicht, LMU München) |
[PDF] |
| UMI ProQuest Digital Dissertations | |
| Analysis of the role of the C2 domain in the function of the ubiquitin ligase, Rsp5 (by D.A. Klos, Northwestern University, September 2006, ISBN: 978-0-542-62100-0) |
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| Application and development of molecular dynamics methods to examine the energy landscapes of protein folding and transient protein-protein complexes (by T.V. Pogorelov, University of Illinois at Urbana-Champaign, January 2007, ISBN: 978-0-542-77539-0) |
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| Combinatorial synthesis of beta-peptides with microwave irradiation: toward the discovery and development of protein-protein interaction inhibitors (by J.K. Murray, University of Wisconsin - Madison, March 2007, ISBN: 978-0-542-88747-5) |
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| Computational methods for predicting coiled-coil protein-protein interactions (by J.H. Fong, Princeton University, September 2005, ISBN: 978-0-542-05951-3) |
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| Discovery of protein-protein interactions of the lysyl oxidase enzyme: Implications for cardiovascular disease, cancer, and fibrosis (by B.C. Fogelgren, University of Hawai'i at Manoa, October 2005, ISBN: 978-0-542-07609-1) |
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| Design and synthesis of antagonists of HOX-PBX protein-protein interaction (by T. Ji, State University of New York at Buffalo, February 2006, ISBN: 978-0-542-27379-7) |
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| Development of multivalent inhibitors for two protein-protein interactions associated with human leukemia (by M.J. Gorczynski, University of Virginia, March 2006, ISBN: 978-0-542-31935-8) |
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| Fluorescent protein resonance energy transfer for high-throughput screening (by A.W. Nguyen, University of California, Santa Barbara, July 2006, ISBN: 978-0-542-53502-4) |
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| Graph theoretical approaches to the analysis of large-scale genomic data (by Q. Yang, University of California, Riverside, September 2006, ISBN: 978-0-542-59982-8) |
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| Identification of the molecular interaction between the dihydropyridine receptor beta subunit and the ryanodine receptor in skeletal muscle (by W. Cheng, University of Wisconsin - Madison, December 2006, ISBN: 978-0-542-75453-1) |
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| Integrating biological knowledge and other data sources into microarray data analysis (by G. Xiao, University of Minnesota, March 2007, ISBN: 978-0-542-89080-2) |
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| Interactions of forkhead-associated domain, FHA1 of Saccharomyces cerevisiae Rad53 kinase with itself and the biological partners, Mdt1 AND Rad9 (by A. Mahajan, Ohio State University, April 2007, ISBN: 978-0-542-93237-3) |
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| Measurement and molecular modeling of protein-protein interactions in aqueous solutions (by A. Paliwal, Johns Hopkins University, October 2005, ISBN: 978-0-542-10466-4) |
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| Mechanism underlying directed assembly of supramolecular MAGUK scaffold complexes (by K.Y. Petrosky, University of California, San Francisco, November 2006, ISBN: 978-0-542-71074-2) |
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| Multistage approach to protein-protein interaction prediction (by D. Kozakov, Boston University, March 2007, ISBN: 978-0-542-86855-9) |
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| Regulation of AMPA receptor trafficking by protein-protein interactions and post-translational modifications (by M. Nuriya, Johns Hopkins University, October 2005, ISBN: 978-0-542-10341-4) |
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| Studies on the topology, modularity, architecture and robustness of the protein-protein interaction network of budding yeast Saccharomyces cerevisiae (by J. Chen, Ohio State University, January 2007, ISBN: 978-0-542-78149-0) |
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| Subcellular targeting of and protein-protein interaction within the bacterial cell division complex (by B.D. Corbin, University of Texas Grad. Sch. of Biomed. Sci. at Houston, January 2007, ISBN: 978-0-542-58126-7) |
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| Surface chemistry and chemical biology for quantitative analyses and regulations of complex protein-protein interaction networks (by Y.-S. Lee, University of Chicago, January 2006, ISBN: 978-0-542-21433-2) |
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| Towards a comprehensive human protein-protein interaction network (by A.K. Ramani, University of Texas at Austin, January 2006, ISBN: 978-0-542-22790-5) |
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| Tutorials |
Docking programs
| 3D-Dock Suite (BioMolecular Modeling, Cancer Research UK) |
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| DOCK (UCSF Molecular Design Institute) |
| DockVision (University Alberta) |
| ESCHER NG (Milan University) |
| FlexX (BioSolveIT GmbH) |
| FRED (OpenEye) |
| HADDOCK (Utrecht University Netherlands) |
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| HEX (University Aberdeen) |
| HINT (Virginia Commonwealth University, eduSoft, L.C.) |
| HotDock (University Paderborn) |
| LIGPLOT v.4.0 (University College of London) |
| SITUS (Scripps Research Institute) |
| VEGA (Milan University) |
| Tutorials |
Related programs for analysis and visualization
| MidasPlus (UCSF, Computer Graphics Lab) |
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The Jena Protein-Protein Interaction Website
